Cluster Applications
The Cluster Applications page provides an overview of software modules available on the HPC systems.These applications facilitate computational research across multiple disc iplines, including bioinformatics, chemistry, physics, and data science. Researchers can use this list to identify available software, understand its classification, and determi ne which cluster it is installed on.
Each application is managed using a module system, making it easy to load specific versions for your research workflows. If you don’t see an application you need, or if you require a different version, reach out to the HPC support team—we’re here to help!
Checking Available Modules
You can check which software is installed on a specific cluster using the following commands:
List all available modules
$ module avail
Search for a specific application
$ module spider <application_name>
Load a module before use
$ module load <application_name>
See currently loaded modules
$ module list
Application Categories
For reference, applications are grouped into the following categories:
bio: Bioinformatics, Biology, and Biomedical
chem: Chemistry, Computational Chemistry, and Quantum Chemistry
lang: Programming Languages and Aids
tools: General-Purpose Tools
vis: Visualization, Plotting, and Documentation
math: Mathematics, Numerical Computing, and Statistical Analysis
lib: Libraries and Dependencies for Scientific Applications
ai: Artificial Intelligence, Machine Learning, and Deep Learning Frameworks
compiler: Compilers and Compiler Toolchains
Application |
Version |
Category |
Cluster |
Description |
|---|---|---|---|---|
2021.11 |
Loki |
A package and environment mgr. used for Python, R, and other data science packages |
||
2024.02-1 |
Vali |
A package and environment mgr. used for Python, R, and other data science packages |
||
2.5.2 |
Loki |
BamTools is a toolkit for handling BAM files. |
||
1.15.1 |
Loki |
bcftools is used to manipulate alignments in the BAM file format |
||
2.20.0 |
Loki |
A utility that performs BCL conversion and demultiplexing in a single step |
||
2.18.0 |
Loki |
The most widely-used tools enable genome arithmetic: Set Theory on the genome. |
||
2.30.0 |
Loki |
The most widely-used tools enable genome arithmetic: Set Theory on the genome. |
||
2.37 |
Loki, Vali |
A GNU collection of binary tools that use a Binary File Descriptor library |
||
0.20.1 |
Loki |
Maps bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step |
||
0.22.3 |
Loki |
Maps bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step |
||
3.8.2 |
Vali |
General-purpose parser generator used in compilers |
||
1.1 patch 03 |
Loki |
Basic Linear Algebra Communication Subroutines |
||
3.8.0 |
Loki |
Basic Linear Algebra Subroutines |
||
13.3.0 |
Vali |
Collection of C++ libraries. |
||
2.2.6 |
Loki |
Tool for aligning sequencing reads to long reference sequences |
||
2.4.4 |
Loki |
Tool for aligning sequencing reads to long reference sequences |
||
0.7.16 |
Loki |
Package for mapping low-divergent sequences against a large reference genome |
||
0.7.17 |
Loki |
Package for mapping low-divergent sequences against a large reference genome |
||
7.0.0, 9.0.1 |
Loki |
A set of analysis pipelines that process Chromium single cell data to align reads, generate feature-barcode matrices, perform clustering and other secondary analysis |
||
7.7.0 |
Loki |
A flexible framework for neural networks designed to write complex architectures simply and intuitively |
||
7.8.0 |
Loki |
A flexible framework for neural networks designed to write complex architectures simply and intuitively |
||
3.3.7 |
Loki |
A C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms |
||
3.1.4 |
Loki |
An extended/exascale implementation of Process Mgmt Interface |
||
10.1.243 |
Loki |
A GPU-accelerated implementation of basic linear algebra subroutines (BLAS) |
||
10.1.243 |
Loki |
A GPU-accelerated implementation of Fastest Fourier Transform (FFT) |
||
10.1.243 |
Loki |
A low overhead analysis tool used to optimize GPU/CPU applications |
||
10.1.243 |
Loki |
A visualization analysis tool used to optimize GPU/CPU applications |
||
10.1.243 |
Loki |
A development environment for creating high performance GPU applications |
||
10.2.89 |
Loki |
A GPU-accelerated implementation of basic linear algebra subroutines (BLAS) |
||
10.2.89 |
Loki |
A GPU-accelerated implementation of Fastest Fourier Transform (FFT) |
||
10.2.89 |
Loki |
A development environment for creating high performance GPU applications |
||
11.0.3 |
Loki |
A GPU-accelerated implementation of basic linear algebra subroutines (BLAS) |
||
11.0.3 |
Loki |
A GPU-accelerated implementation of Fastest Fourier Transform (FFT) |
||
11.0.3 |
Loki |
A development environment for creating high performance GPU applications |
||
11.1.1 |
Loki |
A GPU-accelerated implementation of basic linear algebra subroutines (BLAS) |
||
11.1.1 |
Loki |
A GPU-accelerated implementation of Fastest Fourier Transform (FFT) |
||
11.1.1 |
Loki |
A development environment for creating high performance GPU applications |
||
11.2.0 |
Loki |
A GPU-accelerated implementation of basic linear algebra subroutines (BLAS) |
||
11.2.0 |
Loki |
A GPU-accelerated implementation of Fastest Fourier Transform (FFT) |
||
11.2.0 |
Loki |
A development environment for creating high performance GPU applications |
||
11.4.2 |
Loki |
A GPU-accelerated implementation of basic linear algebra subroutines (BLAS) |
||
11.4.2 |
Loki |
A GPU-accelerated implementation of Fastest Fourier Transform (FFT) |
||
11.4.2 |
Loki |
A development environment for creating high performance GPU applications |
||
11.6.2 |
Loki |
A GPU-accelerated implementation of basic linear algebra subroutines (BLAS) |
||
11.6.2 |
Loki |
A GPU-accelerated implementation of Fastest Fourier Transform (FFT) |
||
11.6.2 |
Loki |
A development environment for creating high performance GPU applications |
||
11.8.0 |
Loki, Vali |
A GPU-accelerated implementation of basic linear algebra subroutines (BLAS) |
||
11.8.0 |
Loki, Vali |
A GPU-accelerated implementation of Fastest Fourier Transform (FFT) |
||
11.8.0 |
Loki, Vali |
A development environment for creating high performance GPU applications |
||
12.0.1 |
Loki |
A GPU-accelerated implementation of basic linear algebra subroutines (BLAS) |
||
12.0.1 |
Loki |
A GPU-accelerated implementation of Fastest Fourier Transform (FFT) |
||
12.0.1 |
Loki |
A development environment for creating high performance GPU applications |
||
12.6.0 |
Loki, Vali |
A development environment for creating high performance GPU applications |
||
7.6.5.32 |
Loki |
A GPU-accelerated library of primitives for deep neural networks, developed by NVIDIA |
||
8.1.1.33 |
Loki |
A GPU-accelerated library of primitives for deep neural networks, developed by NVIDIA |
||
8.1.1.33 |
Loki |
A GPU-accelerated library of primitives for deep neural networks, developed by NVIDIA |
||
8.2.4.15 |
Loki |
A GPU-accelerated library of primitives for deep neural networks, developed by NVIDIA |
||
8.2.4.15 |
Loki |
A GPU-accelerated library of primitives for deep neural networks, developed by NVIDIA |
||
8.5.0.96 |
Loki |
A GPU-accelerated library of primitives for deep neural networks, developed by NVIDIA |
||
2.2.1 |
Loki |
Cufflinks provides Transcriptome assembly and differential analysis for RNA-Seq. |
||
4 |
Loki |
Finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence |
||
2023.12.1 |
Vali |
Parallel computing library in Python. |
||
3.5.1 |
Loki |
suite of python tools particularly developed for the efficient analysis of high-throughput sequencing data, such as ChIP-seq, RNA-seq or MNase-seq. |
||
1.4 |
Loki |
BioConductor v3.1.4 Distribution manager and DEXSeq Library package for R 4.1.2 |
||
0.3.7 |
Vali |
Advanced serialization for Python objects |
||
2.1.2 |
Loki |
A Lightweight, Modular, and Scalable Deep Learning Framework |
||
3.4.0 |
Vali |
C++ template library for linear algebra: matrices, vectors, numerical solvers |
||
2023a.05 |
Vali |
Eigenvalue solvers for massively parallel computations |
||
2.5.1 |
Loki |
A library that simplifies training fast and accurate neural nets using modern best practices |
||
0.11.9 |
Loki |
A quality control analysis tool for high throughput sequencing of data for validation. |
||
0.2 |
Loki |
A tool to annotate long non-coding RNAs from RNA-seq assembled transcripts |
||
3.3.8 |
Loki |
Fastest Fourier Transform in the west |
||
3.3.10 |
Vali |
Fast Fourier Transform library (GCC). |
||
2022a |
Vali |
FOSS toolchain |
||
2022b |
Vali |
FOSS toolchain variant |
||
2023a |
Vali |
FOSS toolchain |
||
4.1.0.0 |
Loki |
Genome Analysis Toolkit. It is a collection of command-line tools for analyzing high-throughput sequencing data with a primary focus on variant discovery. |
||
4.2.6.1 |
Loki |
Genome Analysis Toolkit. It is a collection of command-line tools for analyzing high-throughput sequencing data with a primary focus on variant discovery. |
||
10.3.0 |
Vali |
GNU compliler , commonly known as GCC, is a set of compilers for C, C++, Ada |
||
11.2.0 |
Loki |
GNU compliler , commonly known as GCC, is a set of compilers for C, C++, Ada |
||
11.3.0 |
Vali |
GNU compliler , commonly known as GCC, is a set of compilers for C, C++, Ada |
||
12.3.0 |
Vali |
GNU compliler , commonly known as GCC, is a set of compilers for C, C++, Ada |
||
13.2.0 |
Vali |
GNU compliler , commonly known as GCC, is a set of compilers for C, C++, Ada |
||
13.3.0 |
Vali |
GNU compliler , commonly known as GCC, is a set of compilers for C, C++, Ada |
||
10.2.0 |
Vali |
GNU Compiler front ends and libraries C, C++, Objective-C, Fortran, Java, and Ada |
||
11.2.0 |
Loki, Vali |
GNU Compiler front ends and libraries C, C++, Objective-C, Fortran, Java, and Ada |
||
9.2 |
Loki |
A stub to install gcc-gdb-plugin for compile commands |
||
2.33.1 |
Loki, Vali |
Open-source version control system used to manage software development projects |
||
5.4 |
Loki |
A portable shared-memory programming interface for distributed-mem computers |
||
5.7 |
Loki |
A portable shared-memory programming interface for distributed-mem computers |
||
6.2.1 |
Vali |
Library for arbitrary precision arithmetic. |
||
6.2.0 |
Vali |
Library for arbitrary precision arithmetic. |
||
1.5.1 |
Loki |
A Gaussian process library implemented using PyTorch |
||
3.9.0 |
Vali |
Pythonic interface for HDF5 |
||
1.8.21 |
Loki |
A library and multi-object file format for the transfer of graphical and numerical data between computers |
||
1.10.1 |
Loki |
A library and multi-object file format for the transfer of graphical and numerical data between computers |
||
1.14.0 |
Vali |
A library and multi-object file format for the transfer of graphical and numerical data between computers |
||
0.22.1 |
Loki |
A distributed training framework for TensorFlow, Keras, PyTorch, and MXNet |
||
2.0.2 |
Loki |
A Python package for analysis of high-throughput sequencing data. |
||
1.11.11 |
Loki |
Portable hardware locality of the hierarchical topology of architectures |
||
2.7.1 |
Vali |
Portable hardware locality of the hierarchical topology of architectures |
||
2.9.1 |
Vali |
Portable hardware locality of the hierarchical topology of architectures |
||
2019.5.281 |
Loki |
Intel C/C++ and F90 compilers and libraries and openMP tools |
||
2022.1.0 |
Vali |
Intel C/C++ and F90 compilers and libraries and openMP tools |
||
2023.1.0 |
Vali |
Intel C/C++ and F90 compilers and libraries and openMP tools |
||
2019.5.281 |
Loki |
Intel MPI C/C++, Fortran, and GCC compilers and MPI libraries |
||
2020.2 |
Loki |
Intel runtime environment for Intel Cluster Checker tool |
||
2023.1 |
Loki |
Intel OneAPI Base Toolkit, Intel OneAPI HPC Toolkit |
||
11.0.20 |
Vali |
Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. |
||
4.2.5 |
Loki |
JupyterLab is the next-generation user interface for Project Jupyter offering all the familiar building blocks of the classic Jupyter Notebook |
||
2.14.2 |
Loki |
The Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila. |
||
2.3.1 |
Loki |
Deep Learning library for Theano and TensorFlow |
||
3.9.0 |
Loki |
Linear Algebra PACKage |
||
2.9.10 |
Loki |
A package that is a software library for parsing XML documents |
||
1.1.34 |
Loki |
A package containing XSLT libraries used for extending libxml2 libraries |
||
2.2.7.1 |
Loki |
MACS (Model-based Analysis of ChIP-Seq) is an analysis tool for NGS ChIP-Seq data. |
||
2023b, 2024b |
Vali |
A high-level language and interactive environment for computationally intensive tasks |
||
2021a_u3 |
Loki |
A high-level language and interactive environment for computationally intensive tasks |
||
2021a_u3 |
Loki |
A high-level language and interactive environment for computationally intensive tasks |
||
4.3.9 |
Loki |
A monolithic package containing various python libraries needed by Theao, PyTorch, Keras and TensorFlow |
||
4.7.8 |
Loki |
A monolithic package containing various python libraries needed by Theao, PyTorch, Keras and TensorFlow |
||
4.8.1 |
Loki |
A monolithic package containing various python libraries needed by Theao, PyTorch, Keras and TensorFlow |
||
3.3.2 |
Loki |
Argonne National Laboratory MPI implementation for Gig Ethernet using GCC compilers for C/C++ and Fortran |
||
3.4.2 |
Vali |
Argonne National Laboratory MPI implementation for Gig Ethernet using GCC compilers for C/C++ and Fortran |
||
4.2.1 |
Vali |
Argonne National Laboratory MPI implementation for Gig Ethernet using GCC compilers for C/C++ and Fortran |
||
3.3.2 |
Loki |
Argonne National Laboratory MPI implementation for Gig Ethernet using GCC compilers for C/C++ and Fortran |
||
3.3.2 |
Loki |
Argonne National Laboratory MPI implementation for Gig Ethernet using GCC compilers for C/C++ and Fortran |
||
2.3.4 |
Loki |
An MPI over Infiniband implementation using GCC compilers for C/C++ and Fortran |
||
2.3.4 |
Loki |
An MPI over Infiniband implementation using GCC compilers for C/C++ and Fortran |
||
2.3.4 |
Loki |
An MPI over Infiniband implementation using GCC compilers for C/C++ and Fortran |
||
2.3.4 |
Loki |
An MPI over Infiniband implementation with performance scaled messaging using GCC compilers for C/C++ and Fortran |
||
2.3.4 |
Loki |
An MPI over Infiniband implementation with performance scaled messaging using GCC compilers for C/C++ and Fortran |
||
1.8.0 |
Loki |
Flexible and Efficient Library for Deep Learning |
||
2.16.01 |
Vali |
Netwide Assembler for x86 assembly programming |
||
2.7.8, 3.0, 4.0 |
Loki |
The NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collective communication primitives that are performance optimized for NVIDIA GPUs |
||
4.7.3 |
Loki |
A set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data |
||
22.7 |
Vali |
NVIDIA HPC Compiler suite with CUDA support. |
||
22.11 |
Vali |
NVIDIA HPC Compiler suite with CUDA support. |
||
23.1 |
Loki |
NVIDIA HPC SDK, libraries, CUDA (12.0, 11.8,11.0), compilers, and MPI |
||
24.1 |
Vali |
NVIDIA HPC Compiler suite with CUDA support. |
||
23.1 |
Loki |
NVIDIA HPC SDK, libraries, CUDA (12.0, 11.8,11.0), and MPI (no compiler) |
||
23.1 |
Loki |
NVIDIA HPC SDK, libraries, CUDA (12.0, 11.8,11.0), and compilers (no MPI) |
||
1.6.0 |
Loki |
An open format built to represent machine learning models |
||
1.9.0 |
Loki |
An open format built to represent machine learning models |
||
nan |
Loki |
Open-source, optimizing compiler for the x86-64 processor architectures and research applications platforms |
||
0.3.7 |
Loki |
An optimized BLAS library based on GotoBLAS2 |
||
0.3.20 |
Vali |
An optimized BLAS library based on GotoBLAS3 |
||
3.4.12 |
Loki |
An open source computer vision and machine learning software library |
||
4.5.4 |
Loki |
An open source computer vision and machine learning software library |
||
17 |
Loki |
Oracle’s free opensourced GPL-licensed, java stack (openJDK/JRE) |
||
1.10.7 |
Loki |
Open MPI for Gig Ethernet and infiniBand using GCC compilers for C/C++, Fortran, and VampirTrace |
||
3.1.6 |
Loki |
Open MPI for Gig Ethernet and infiniBand using GCC compilers for C/C++, Fortran |
||
4.0.5 |
Loki |
Open MPI for Gig Ethernet and infiniBand using GCC compilers for C/C++, Fortran |
||
4.1.4 |
Vali |
Open MPI for Gig Ethernet and infiniBand using GCC compilers for C/C++, Fortran |
||
4.1.5 |
Vali |
Open MPI for Gig Ethernet and infiniBand using GCC compilers for C/C++, Fortran |
||
1.10.7 |
Loki |
Open MPI for Gig Ethernet and infiniBand using GCC compilers for C/C++, Fortran, and VampirTrace |
||
4.0.5 |
Loki |
Open MPI for Gig Ethernet and infiniBand using GCC compilers for C/C++, Fortran |
||
4.1.5 |
Vali |
Open MPI for Gig Ethernet and infiniBand using GCC compilers for C/C++, Fortran |
||
4.1.4 |
Vali |
Open MPI built with NVHPC and CUDA support |
||
1.10.1 |
Loki |
Open MPI for Gig Ethernet and infiniBand using Fortran 77/95, C/C++, and shared memory programming model OpenMP |
||
1.10.7 |
Loki |
Open MPI for Gig Ethernet and infiniBand using GCC compilers for C/C++, Fortran, and VampirTrace |
||
1.7.0.72 |
Loki |
Oracle server-side Jave Runtime Environment (JRE) |
||
1.8.0.152 |
Loki |
Oracle server-side Jave Runtime Environment (JRE) |
||
5.18.4 |
Loki |
A general-purpose programming language for text manipulation, web development, network programming, and GUI development |
||
5.36.0 |
Vali |
A general-purpose programming language for text manipulation, web development, network programming, and GUI development |
||
5.38.0 |
Vali |
A general-purpose programming language for text manipulation, web development, network programming, and GUI development |
||
2.0.1 |
Loki |
Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. |
||
2.27.1 |
Loki |
Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. |
||
3.8.0 |
Loki |
A language-neutral, platform-neutral extensible mechanism for serializing structured data |
||
3.9.2 |
Loki |
A language-neutral, platform-neutral extensible mechanism for serializing structured data |
||
1.7 |
Loki |
open-source suite of ab initio quantum chemistry programs |
||
0.11.2 |
Loki |
Pyscenic is a lightning-fast python implementation of the SCENIC pipeline - python3.8.5 |
||
2.7.9 |
Loki |
An interpreted, interactive, object-oriented programming language |
||
3.10.4 |
Vali |
An interpreted, interactive, object-oriented programming language |
||
3.11.5 |
Vali |
An interpreted, interactive, object-oriented programming language |
||
3.3.4 |
Loki |
An interpreted, interactive, object-oriented programming language |
||
3.6.6 |
Loki |
An interpreted, interactive, object-oriented programming language |
||
3.7.9 |
Loki |
An interpreted, interactive, object-oriented programming language |
||
3.7.9 |
Loki |
An interpreted, interactive, object-oriented programming language |
||
3.8.5 |
Loki |
An interpreted, interactive, object-oriented programming language |
||
3.8.6 |
Vali |
An interpreted, interactive, object-oriented programming language |
||
3.9.6 |
Loki, Vali |
An interpreted, interactive, object-oriented programming language |
||
3.9.9 |
Loki |
An interpreted, interactive, object-oriented programming language |
||
1.9.1 |
Loki, Vali |
A deep learning framework that puts Python first |
||
2.1.2 |
Loki |
A deep learning framework that puts Python first |
||
1.9.1 |
Loki |
A collection of models, libraries, dataset and useful extra functionality for PyTorch |
||
2020.2 |
Vali |
Computes convex hulls, Delaunay triangulations, Voronoi diagrams, etc |
||
7.3.1 |
Vali |
Quantum simulation package for materials science. |
||
2.15.2 |
Loki |
R is an interpreted language for statistical computation and graphics |
||
3.2.4 |
Loki |
R is an interpreted language for statistical computation and graphics |
||
3.4.2 |
Loki |
R is an interpreted language for statistical computation and graphics |
||
4.1.2 |
Loki |
R is an interpreted language for statistical computation and graphics |
||
2.9.1 |
Vali |
Distributed computing framework for Python. |
||
7.2.3 |
Vali |
In-memory data structure store for caching and databases |
||
1.70.0 |
Vali |
Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety. |
||
1.6 |
Loki |
Samtools is a set of utilities that manipulate alignments in the SAM (Sequence Alignment/Map), BAM, and CRAM formats. (samtool, htslib, bcftools) |
||
1.15.1 |
Loki |
Samtools is a set of utilities that manipulate alignments in the SAM (Sequence Alignment/Map), BAM, and CRAM formats. (samtool, htslib, bcftools) |
||
2.1.0 |
Loki |
A library of high performance linear algebra routines for MPI/PVM environments. |
||
2.2.0 |
Vali |
A library of high performance linear algebra routines for MPI/PVM environments. |
||
1.9.1 |
Loki |
Python toolkit for analyzing single-cell gene expression data built with anndata. |
||
1.3.1 |
Vali |
Machine learning library for Python with performance enhancements. |
||
1.1.2 |
Vali |
Machine learning library for Python. |
||
2.4 |
Loki |
Scalable toolkit for RNA velocity analysis in single cells, based on Bergen (nature biotech 2020) |
||
3.63 |
Loki |
An interpreted, interactive, object-oriented programming language |
||
0.17.2 |
Loki |
A package manager for installing scientific software on supercomputers, Linux, and mac OS |
||
3.45.3 |
Vali |
Self-contained, high-reliability embedded database engine |
||
3.0.0 |
Loki |
SRA Toolkit stores/processes raw sequence data into several data formats. |
||
2.5.0c |
Loki |
Reads the genome and maps them in output files (SAM/BAM format) |
||
2.7.10 |
Loki |
Reads the genome and maps them in output files (SAM/BAM format) |
||
2.0.3 |
Loki |
A software package is a tool kit for processing next-gen sequencing data |
||
1.15.5 |
Loki |
An Open Source Software Library for Machine Intelligence |
||
2.15.1 |
Vali |
Library for deep learning framework with CUDA acceleration |
||
2.5.2 |
Loki |
An Open Source Software Library for Machine Intelligence |
||
2.7.0 |
Loki |
An Open Source Software Library for Machine Intelligence |
||
tensorflow3 |
tensorflow5 |
TensorFlow machine learning framework. |
||
tensorflow3 |
tensorflow5 |
TensorFlow with CUDA support for accelerated computing. |
||
2.5.2 |
Loki |
A collection of models, libraries, dataset and useful extra functionality for TensorFlow 2 |
||
2.7.0 |
Loki |
A collection of models, libraries, dataset and useful extra functionality for TensorFlow 2 |
||
7.0.0.11 |
Loki |
A high performance neural network inference engine for production deployment of deep learning applications |
||
8.0.3.4 |
Loki |
A high performance neural network inference engine for production deployment of deep learning applications |
||
1.0.5 |
Loki |
A Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently |
||
8.11.3 |
Loki |
The Tinker molecular modeling software is a complete and general package for molecular mechanics and dynamics, with some special features for biopolymers. |
||
20230803 |
Loki |
Tinker-HP is a CPUs and GPUs based, multi-precision, MPI massively parallel package dedicated to long polarizable molecular dynamics simulations and to polarizable QM/MM. |
||
3.11.3 |
Vali |
Python’s built-in GUI toolkit |
||
2.1.1 |
Loki |
A fast splice junction mapper for RNA-Seq reads (includes SAMtools) |
||
0.6.6 |
Loki |
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data. |
||
0.39 |
Loki |
Performs useful trimming tasks for Illumina paired-end and single ended data |
||
1.8.1 |
Loki |
Provides an optimized communication layer for Message Passing (MPI) |
||
0.17.1 |
Loki |
Manipulates VCF file data and indexes |
||
0.17.17 |
Loki |
Package for the analysis of expression dynamics in single cell RNA seq data |
||
75 |
Loki |
VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.) |
||
1.5.0 |
Loki |
An optimized distributed gradient boosting library designed to be highly efficient, flexible and portable |
||
5.2.5 |
Loki, Vali |
A general-purpose data compression software utility with a high compression rate |