scanpy

Version:: 1.9.1
Category:: bio
Cluster:: Loki

Author / Distributor

https://scanpy.readthedocs.io/en/stable

Description

Description: Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.

Documentation

usage: scanpy [-h] {settings} ...

There are a few packages providing commands. Try e.g. `pip install scanpy-scripts`!

positional arguments:
 {settings}

optional arguments:
 -h, --help  show this help message and exit

Examples/Usage

List scanpy modules:
```
$ module avail scanpy
```
Load the scanpy module:
```
$ module load bio/scanpy/1.9.1
```
Check the loaded modules:
```
$ module list
```
Unload the scanpy module:
```
$ module unload bio/scanpy/1.9.1
```

Installation

Source code is obtained from Scanpy