adegent

Version:

2.1.11

Category:

bio

Cluster:

Vali

Author / Distributor

https://cran.r-project.org/package=adegenet

Description

adegenet is an R package dedicated to the exploratory analysis of genetic and genomic data. It provides tools for multivariate analysis, population genetics, and data visualization.

Key capabilities:

  • Analysis of genetic and genomic datasets

  • Multivariate statistical methods (PCA, DAPC, etc.)

  • Population structure and clustering analysis

  • Data handling using specialized genetic data classes

  • Integration with other R packages for bioinformatics workflows

Note

adegenet is used within R. You must load R before using this package.

Documentation

# Start R
$ R

# Load adegenet inside R
> library(adegenet)

# Get help
> ?adegenet

Examples/Usage

  • Load the R module:

    $ module load lang/R/4.4.2-gfbf-2024a

  • Start R:

    $ R

  • Load adegenet inside R:

    > library(adegenet)

  • Check version:

    > packageVersion("adegenet")

Installation

adegenet is pre-installed on the cluster and available through the R module.

Load R and use the package directly without additional installation.